GenoScreen

Genomic information at the service of human health and its environment

Deeplex

Tuberculosis:
Predict in 48h the resistance
to the 15 major anti-TB drugs

Healthcare

For healthcare

Cosmetics

For beauty and cosmetics

Environment

For the environment

Nutrition

For nutrition

Research

For academic research

Biotech

For biotech

GenosScreen offers you a fast service for the identification of your microorganisms by DNA sequencing and comparison with international databases.

For species identification, the ribosomal DNA regions investigated are adapted to your microorganism. In addition, other genomic targets (rpoB, gyrB,...) can be used to refine this identification and adapt it to your request (for example, discrimination within a group of species sharing the same ribosomal DNA sequence).

GenoScreen also offers complete genome sequencing (WGS) for a more accurate characterization of your microorganisms.

 

 

Ask for a quotation

 

GenoScreen proposes you the opportunity to characterize more accurately your microorganisms (subspecies or strain characterization) using standardized and validated molecular biology methods such as MLST or MLVA (including MIRU-VNTR)

MultiLocus Sequencing Typing (MLST)

The MLST (MultiLocus Sequencing Typing) sequencing typing is the reference technique for the distinction of different strains. This method is based on the house-keeping genes sequencing (house-keeping genes are encoding essential proteins of the bacterium). These sequences have the particularity of presenting a stable polymorphism over time and sufficient enough to distinguish strains from each other.

This approach allows the characterization of a microorganism whose genus (or species) is known in order to identity the species(or subspecies) and this thanks to the sequencing of 7 house-keeping genes.

The MLST by GenoScreen

GenoScreen's MLST service offer is a complete package of services realized from extracted DNA or thermolysate. This includes the PCRs realization, the sequencing on a capillary sequencer, the sequences analysis and the strain assignment..

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Règne / KingdomClasse / ClassOrdre / OrderEspèce / Species
AnimaliaMyxozoaMultivalvulidaKudoa septempunctata
AnimaliaRhabditophoraPlagiorchiidaClonorchis sinensis
BacteriaActinobacteriaActinomycetalesCorynebacterium diphtheriae
BacteriaActinobacteriaActinomycetalesCutibacterium acnes
BacteriaActinobacteriaActinomycetalesMycobacterium abscessus complex
BacteriaActinobacteriaActinomycetalesMycobacterium spp.
BacteriaActinobacteriaActinomycetalesRhodococcus equi
BacteriaActinobacteriaActinomycetalesStreptomyces spp.
BacteriaAlpha ProteobacteriaRhizobialesBartonella bacilliformis
BacteriaAlpha ProteobacteriaRhizobialesBartonella henselae
BacteriaAlpha ProteobacteriaRhizobialesBartonella washoensis
BacteriaAlpha ProteobacteriaRhizobialesBrucella spp.
BacteriaAlpha ProteobacteriaRhizobialesCandidatus Liberibacter solanacearum
BacteriaAlpha ProteobacteriaRhizobialesSinorhizobium spp.
BacteriaAlpha ProteobacteriaRickettsialesAnaplasma phagocytophilum
BacteriaAlpha ProteobacteriaRickettsialesOrientia tsutsugamushi
BacteriaAlpha ProteobacteriaRickettsialesWolbachia spp.
BacteriaBacilliBacillalesBacillus cereus
BacteriaBacilliBacillalesBacillus licheniformis
BacteriaBacilliBacillalesBacillus subtilis
BacteriaBacilliBacillalesMacrococcus canis
BacteriaBacilliBacillalesMacrococcus caseolyticus
BacteriaBacilliBacillalesPaenibacillus larvae
BacteriaBacilliBacillalesStaphylococcus aureus
BacteriaBacilliBacillalesStaphylococcus epidermidis
BacteriaBacilliBacillalesStaphylococcus haemolyticus
BacteriaBacilliBacillalesStaphylococcus hominis
BacteriaBacilliBacillalesStaphylococcus pseudintermedius
BacteriaBacilliLactobacillalesCarnobacterium maltaromaticum
BacteriaBacilliLactobacillalesEnterococcus faecalis
BacteriaBacilliLactobacillalesEnterococcus faecium
BacteriaBacilliLactobacillalesLactobacillus salivarius
BacteriaBacilliLactobacillalesMelissococcus plutonius
BacteriaBacilliLactobacillalesPediococcus pentosaceus
BacteriaBacilliLactobacillalesStreptococcus agalactiae
BacteriaBacilliLactobacillalesStreptococcus anginosus
BacteriaBacilliLactobacillalesStreptococcus bovis complex
BacteriaBacilliLactobacillalesStreptococcus canis
BacteriaBacilliLactobacillalesStreptococcus dysgalactiae
BacteriaBacilliLactobacillalesStreptococcus equinus complex
BacteriaBacilliLactobacillalesStreptococcus faecalis
BacteriaBacilliLactobacillalesStreptococcus gallolyticus
BacteriaBacilliLactobacillalesStreptococcus gordonii
BacteriaBacilliLactobacillalesStreptococcus mitis
BacteriaBacilliLactobacillalesStreptococcus mutans
BacteriaBacilliLactobacillalesStreptococcus oralis
BacteriaBacilliLactobacillalesStreptococcus pneumoniae
BacteriaBacilliLactobacillalesStreptococcus pyogenes
BacteriaBacilliLactobacillalesStreptococcus salivarius
BacteriaBacilliLactobacillalesStreptococcus suis
BacteriaBacilliLactobacillalesStreptococcus thermophilus
BacteriaBacilliLactobacillalesStreptococcus uberis
BacteriaBacilliLactobacillalesStreptococcus viridans
BacteriaBacilliLactobacillalesStreptococcus zooepidemicus
BacteriaBacteroidetesPorphyromonadaceaePorphyromonas gingivalis
BacteriaBeta ProteobacteriaBurkholderialesAchromobacter
BacteriaBeta ProteobacteriaBurkholderialesBordetella spp.
BacteriaBeta ProteobacteriaBurkholderialesBurkholderia cepacia complex
BacteriaBeta ProteobacteriaBurkholderialesBurkholderia pseudomallei
BacteriaBeta ProteobacteriaBurkholderialesTaylorella spp.
BacteriaBeta ProteobacteriaNeisserialesNeisseria spp.
BacteriaChlamydiaeChlamydialesChlamydiales spp.
BacteriaClostridiaClostridialesClostridioides difficile
BacteriaClostridiaClostridialesClostridium botulinum
BacteriaClostridiaClostridialesClostridium septicum
BacteriaEpsilon ProteobacteriaCampylobacteralesArcobacter spp.
BacteriaEpsilon ProteobacteriaCampylobacteralesCampylobacter spp.
BacteriaEpsilon ProteobacteriaCampylobacteralesHelicobacter cinaedi
BacteriaEpsilon ProteobacteriaCampylobacteralesHelicobacter pylori
BacteriaEpsilon ProteobacteriaCampylobacteralesHelicobacter suis
BacteriaFlavobacteriaFlavobacterialesFlavobacterium psychrophilum
BacteriaFlavobacteriaFlavobacterialesOrnithobacterium rhinotracheale
BacteriaFlavobacteriaFlavobacterialesRiemerella anatipestifer
BacteriaFlavobacteriaFlavobacterialesTenacibaculum spp.
BacteriaGamma ProteobacteriaAeromonadalesAeromonas spp.
BacteriaGamma ProteobacteriaCardiobacterialesDichelobacter nodosus
BacteriaGamma ProteobacteriaEnterobacterialesCitrobacter freundii
BacteriaGamma ProteobacteriaEnterobacterialesCronobacter spp.
BacteriaGamma ProteobacteriaEnterobacterialesEdwardsiella spp.
BacteriaGamma ProteobacteriaEnterobacterialesEnterobacter cloacae
BacteriaGamma ProteobacteriaEnterobacterialesEscherichia spp.
BacteriaGamma ProteobacteriaEnterobacterialesKlebsiella aerogenes
BacteriaGamma ProteobacteriaEnterobacterialesklebsiella michiganensis
BacteriaGamma ProteobacteriaEnterobacterialesKlebsiella oxytoca
BacteriaGamma ProteobacteriaEnterobacterialesSalmonella spp.
BacteriaGamma ProteobacteriaEnterobacterialesYersinia pseudotuberculosis
BacteriaGamma ProteobacteriaEnterobacterialesYersinia ruckeri
BacteriaGamma ProteobacteriaEnterobacterialesYersinia spp.
BacteriaGamma ProteobacteriaPasteurellalesGallibacterium anatis
BacteriaGamma ProteobacteriaPasteurellalesHaemophilus influenzae
BacteriaGamma ProteobacteriaPasteurellalesHaemophilus parasuis
BacteriaGamma ProteobacteriaPasteurellalesMannheimia haemolytica
BacteriaGamma ProteobacteriaPasteurellalesPasteurella multocida
BacteriaGamma ProteobacteriaPseudomonadalesAcinetobacter baumannii
BacteriaGamma ProteobacteriaPseudomonadalesMoraxella catarrhalis
BacteriaGamma ProteobacteriaPseudomonadalesPseudomonas aeruginosa
BacteriaGamma ProteobacteriaPseudomonadalesPseudomonas fluorescens
BacteriaGamma ProteobacteriaPseudomonadalesPseudomonas putida
BacteriaGamma ProteobacteriaThiotrichalesPiscirickettsia salmonis
BacteriaGamma ProteobacteriaVibrionalesPhotobacterium damselae
BacteriaGamma ProteobacteriaVibrionalesVibrio cholerae
BacteriaGamma ProteobacteriaVibrionalesVibrio parahaemolyticus
BacteriaGamma ProteobacteriaVibrionalesVibrio spp.
BacteriaGamma ProteobacteriaVibrionalesVibrio tapetis
BacteriaGamma ProteobacteriaVibrionalesVibrio vulnificus
BacteriaGamma ProteobacteriaXanthomonadalesStenotrophomonas maltophilia
BacteriaGamma ProteobacteriaXanthomonadalesXylella fastidiosa
BacteriaMollicutesMycoplasmatalesMycoplasma agalactiae
BacteriaMollicutesMycoplasmatalesMycoplasma bovis
BacteriaMollicutesMycoplasmatalesMycoplasma flocculare
BacteriaMollicutesMycoplasmatalesMycoplasma hominis
BacteriaMollicutesMycoplasmatalesMycoplasma hyopneumoniae
BacteriaMollicutesMycoplasmatalesMycoplasma hyorhinis
BacteriaMollicutesMycoplasmatalesMycoplasma iowae
BacteriaMollicutesMycoplasmatalesMycoplasma pneumoniae
BacteriaMollicutesMycoplasmatalesMycoplasma synoviae
BacteriaMollicutesMycoplasmatalesUreaplasma spp.
BacteriaSpirochaetesBrachyspiralesBrachyspira spp.
BacteriaSpirochaetesLeptospiralesLeptospira spp.
BacteriaSpirochaetesSpirochaetalesBorrelia spp.
BacteriaSpirochaetesSpirochaetalesTreponema pallidum subsp. pallidum
ChromistaOomycotaSaprolegnialesSaprolegnia parasitica
ExcavataParabasaliaTrichomonadidaTrichomonas vaginalis
FungiBlastocystaeBlastocystidaBlastocystis sp.
FungiEurotiomycetesEurotialesAspergillus fumigatus
FungiSaccharomycetesSaccharomycetalesCandida albicans
FungiSaccharomycetesSaccharomycetalesCandida glabrata
FungiSaccharomycetesSaccharomycetalesCandida krusei

Multiple Loci VNTR Analysis (MLVA)

The MLVA (Multiple Loci VNTR Analysis) is a genetic analysis method of VNTR (variable number of tandem repeats) pattern polymorphism based on their count. During a first step, each targeted VNTR locus is amplified by PCR with flanking-region specific primers. The fragments obtained are then separated according to their size by electrophoresis on capillary sequencer. The genotyping of each locus and the results compiled from each sample allow to assign to the strain a specific numerical code for a subspecies.

The MLVA approach allows to characterize a microorganism whose species is known, to identify, at least, the subspecies through allele typing and comparison to the MLVA databases. This method is more selective than the MLST method and does not require a DNA sequencing step. It thus makes it possible to differentiate close subspecies (clonal species).

The MLVA by GenoScreen

GenoScreen's MLVA service offer is a complete package of services realized from extracted DNA or thermolysate. This includes the PCRs realization, the electrophoresis on a capillary sequencer, the data analysis and the strain assignment. 

 Ask for a quotation

Règne / KingdomClasse / ClassOrdre / OrderEspèce / Species
BacteriaActinobacteriaActinomycetalesMycobacterium tuberculosis
BacteriaActinobacteriaActinomycetalesMycobacterium bovis
BacteriaActinobacteriaActinomycetalesMycobacterium avium
BacteriaGamma ProteobacteriaThiotrichalesFrancisella tularensis

The analysis can be performed starting from a customized typing scheme based on your needs, in connection with the data available for your species.

MIRU-VNTR : the MLVA solution for the Mycobacterium tuberculosis typing

The MIRU-VNTR solution developed by our teams is being used by various healthcare centers and research teams internationally, as a kit or service delivery. GenoScreen is the worldwide leader in genotyping strains of the Mycobacterium tuberculosis complex, the agent responsible for tuberculosis

Discover our MIRU-VNTR solutions

GenoScreen - Services provided

GenoScreen offers whole-genome analyses that can detect novel genotype-phenotype associations or known genetic variants.

This technique is based on the detection of a change in a single pair of nucleotides at a particular position. Starting from samples of organic matter, SNP analysis can be used to identify genotypes (people, for example) or build family trees for people or species.

Depending on the number of SNPs studied and the number of samples, GenoScreen can develop additional approaches that address your objectives (TaqMan/KASPar, Fluidigm, Sanger sequencing, etc.):

  • NGS for whole-genome analyses (studies of populations or associations and genomic selection)
  • Fluidigm Biomark, NGS and microarrays for genotyping a gene (candidate regions)
  • Real-time PCR and Sanger sequencing for analyzing specific individual SNPs (in pharmacogenetics and diagnostics).

For new SNP discovery, GenoScreen offers RAD-Seq approaches. This technology reduces the complexity of the analyses and scans a small fraction (0.1-10%) of a selected genome, for genotyping and/or genetic marker discovery.

The analysis of high-throughput sequencing data enables the identification of a large quantity of genetic variants (such as SNPs).

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This kind of genotyping is based on polymorphism of microsatellites found in the genome.

GenoScreen - Services provided

Geno Sat® is a standardized solution for all kinds of eukaryotic species, simple and flexible for:

  • microsatellite libraries production using next-generation sequencing,
  • development of relevant polymorphic markers
  • population genotyping.
Since 2009, our solution has already been used on more than 500 different species for phylogenetic studies, biodiversity analysis or preservation programs.

 

Geno Sat®

Starting from 1 µg of genomic DNA per species, and based on the Illumina MiSeq high throughput sequencing technology, GenoSat® allows to obtain within 2 months bioinformatically validated primers designed on identified microsatellites flanking regions.

 

Geno Sat® pack

This flexible solution allows you to both biologically validate a batch of primer pairs (after in silico validation), then study polymorphism of validated primer pairs.

 

Geno Sat® pack +

The Geno Sat® pack + solution is our most complete offer allowing the optimization of multiplexed PCR and/or genotyping of large populations using polymorphic markers of interest.

 

Customized Geno Sat®

We can also perform each of the sub-steps (biological validation / polymorphism study / multiplexed PCR development / population genotyping with or without analysis) on request, including from already published markers

Microsatellite Genotyping

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Règne / KingdomClasse / ClassOrdre / OrderEspèce / Species
AnimaliaActinopterygiiAcipenseriformesAcipenser gueldenstaedtii
AnimaliaActinopterygiiAcipenseriformesAcipenser ruthenus
AnimaliaActinopterygiiAcipenseriformesAcipenser stellatus
AnimaliaActinopterygiiAcipenseriformesHuso huso
AnimaliaActinopterygiiAnguilliformesGymnothorax chilospilus
AnimaliaActinopterygiiBatrachoidiformesHalobatrachus didactylus
AnimaliaActinopterygiiCharaciformesBrycon insignis
AnimaliaActinopterygiiClupeiformesEngraulis
AnimaliaActinopterygiiCypriniformesBarbus barbus
AnimaliaActinopterygiiCypriniformesChondrostoma nasus
AnimaliaActinopterygiiCypriniformesChondrostoma toxostoma
AnimaliaActinopterygiiCypriniformesGobio gobio
AnimaliaActinopterygiiCyprinodontiformesAphyosemion bualanum
AnimaliaActinopterygiiCyprinodontiformesChromaphyosemion splendopleure
AnimaliaActinopterygiiPerciformesApogon
AnimaliaActinopterygiiPerciformesBathygobius soporator
AnimaliaActinopterygiiPerciformesCoptodon guineensis
AnimaliaActinopterygiiPerciformesDissostichus eleginoides
AnimaliaActinopterygiiPerciformesEpinephelus marginatus
AnimaliaActinopterygiiPerciformesSalaria fluviatilis
AnimaliaActinopterygiiPerciformesSiganus argenteus
AnimaliaActinopterygiiPerciformesSparisoma viride
AnimaliaActinopterygiiPerciformesSparus aurata
AnimaliaActinopterygiiPerciformesThunnus alalunga
AnimaliaActinopterygiiPerciformesTilapia
AnimaliaActinopterygiiPerciformesTilapia guineensis
AnimaliaActinopterygiiPerciformesTrachurus trecae
AnimaliaActinopterygiiPleuronectiformesPlatichthys
AnimaliaActinopterygiiScorpaeniformesScorpaena porcus
AnimaliaAmphibiaAnuraAgalychnis lemur
AnimaliaAmphibiaAnuraBombina variegata
AnimaliaAmphibiaAnuraBufo bufo
AnimaliaAmphibiaAnuraBufo calamita
AnimaliaAmphibiaAnuraCraugastor crassidigitus
AnimaliaAmphibiaAnuraCraugastor fitzingeri
AnimaliaAmphibiaAnuraDendrobates tinctorius
AnimaliaAmphibiaAnuraHyalinobatrachium valerioi
AnimaliaAmphibiaAnuraXenopus laevis
AnimaliaAmphibiaCaudataNeurergus kaiseri
AnimaliaAmphibiaUrodelaSalamandra lanzai
AnimaliaAmphibiaUrodelaTriturus marmoratus
AnimaliaArachnidaIxodidaDermacentor reticulatus
AnimaliaArachnidaIxodidaHyalomma aegyptium
AnimaliaArachnidaScorpionesOpistophthalmus pallipes
AnimaliaArachnidaTrombidiformesPanonychus ulmi
AnimaliaAscidiaceaPhlebobranchiaCiona intestinalis type A
AnimaliaAscidiaceaPhlebobranchiaCiona intestinalis Type B
AnimaliaAscidiaceaStolidobranchiaBotrylloides digense
AnimaliaAscidiaceaStolidobranchiaPyura herdmani
AnimaliaAscidiaceaStolidobranchiaPyura praeputalis
AnimaliaAscidiaceaStolidobranchiaPyura stolonifera
AnimaliaAvesAccipitriformesCircus pygargus
AnimaliaAvesCharadriiformesLarus
AnimaliaAvesColumbiformesColumba malherbii
AnimaliaAvesFalconiformesPandion haliaetus
AnimaliaAvesPasseriformesEstrilda astrild
AnimaliaAvesPasseriformesLaniarius atrococcineus
AnimaliaAvesProcellariiformesOceanodroma monteiroi
AnimaliaBivalviaCardiidaDonax vittatus
AnimaliaBivalviaCardiidaMonodacna colorata
AnimaliaBivalviaPectinoidaPecten maximus
AnimaliaBivalviaUnionoidaAnodonta woodiana
AnimaliaBivalviaUnionoidaUnio crassus
AnimaliaBivalviaVeneroidaCorbicula fluminea
AnimaliaBivalviaVeneroidaDonacilla cornea
AnimaliaBranchiopodaAnostracaArtemia franciscana
AnimaliaBranchiopodaAnostracaArtemia parthenogenetica
AnimaliaBranchiopodaAnostracaArtemia urmiana
AnimaliaCephalaspidomorphiPetromyzontiformesLampetra planeri
AnimaliaCephalopodaSepiidaSepia officinalis
AnimaliaCestodaCaryophillideaCaryophyllaeus
AnimaliaCestodaPseudophyllideaDiphyllobothrium dentriticum
AnimaliaCestodaPseudophyllideaDiphyllobothrium latum
AnimaliaCestodaPseudophyllideaCarcharhinus leucas
AnimaliaChondrichthyesCarcharhiniformesGaleocerdo cuvier
AnimaliaChondrichthyesCarcharhiniformesCarcharodon carcharias
AnimaliaChondrichthyesLamniformesAmblyraja sp.
AnimaliaChondrichthyesRajiformesBathyraja meridionalis
AnimaliaChondrichthyesRajiformesSquatina squatina
AnimaliaChondrichthyesSquatiniformesAporrectodea giardi
AnimaliaClitellataOpisthoporaAporrectodea icterica
AnimaliaClitellataOpisthoporaLumbricus castaneus
AnimaliaClitellataOpisthoporaLumbricus rubellus
AnimaliaClitellataOpisthoporaLumbricus terrestris
AnimaliaClitellataOpisthoporaCryptopygus antarcticus
AnimaliaEntognathaCollembolaIsotomurus maculatus
AnimaliaEntognathaCollembolaTullbergia bisetosa
AnimaliaEntognathaCollembolaBiomphalaria prona
AnimaliaGastropodaBasommatophoraBiomphalaria schrami
AnimaliaGastropodaBasommatophoraDrepanotrema aeruginosum
AnimaliaGastropodaHygrophilaIndoplanorbis exustus
AnimaliaGastropodaHygrophilaLymnaea cubensis
AnimaliaGastropodaHygrophilaLymnea natalensis
AnimaliaGastropodaHygrophilaLittorina saxatilis
AnimaliaGastropodaLittorinimorphaCyclope neritea
AnimaliaGastropodaNeogastropodaCepaea hortensis
AnimaliaGastropodaStylommatophoraTyrrhenaria ceratina
AnimaliaGastropodaStylommatophoraGibbula pennanti
AnimaliaGastropodaVetigastropodaActinopyga echinites
AnimaliaHolothuroideaAspidochirotidaActinopyga equinites
AnimaliaHolothuroideaAspidochirotidaHydra oligactis
AnimaliaHydrozoaAnthoathecataeMillepora platyphylla
AnimaliaHydrozoaAnthoathecataeLytocarpia brevirostris
AnimaliaHydrozoaLeptothecataMacrorhynchia phoenicea
AnimaliaHydrozoaLeptothecataConstrictotermes cavifrons
AnimaliaInsectaBlattodeaEmbiratermes neotenicus
AnimaliaInsectaBlattodeaInquilinitermes inquilinus
AnimaliaInsectaBlattodeaIsoptera
AnimaliaInsectaBlattodeaKalotermes flavicollis
AnimaliaInsectaBlattodeaLauraesilpha
AnimaliaInsectaBlattodeaReticulitermes grassei/banyulensis
AnimaliaInsectaBlattodeaSilvestritermes minutus
AnimaliaInsectaBlattodeaAbax parallelepipedus
AnimaliaInsectaColeopteraAleochara bilineata
AnimaliaInsectaColeopteraAleochara bipustulata
AnimaliaInsectaColeopteraAphaenops cerberus
AnimaliaInsectaColeopteraCeutorhynchus assimilis
AnimaliaInsectaColeopteraCoccinella septempunctata
AnimaliaInsectaColeopteraCurculio glandium
AnimaliaInsectaColeopteraDendroctonus micans
AnimaliaInsectaColeopteraDiabrotica virgifera
AnimaliaInsectaColeopteraHippodamia undecimnotata
AnimaliaInsectaColeopteraLarinus cynarae
AnimaliaInsectaColeopteraLethrus apterus
AnimaliaInsectaColeopteraLucanus cervus
AnimaliaInsectaColeopteraMeligethes aeneus
AnimaliaInsectaColeopteraMonochamus galloprovincialis
AnimaliaInsectaColeopteraPissodes
AnimaliaInsectaColeopteraProstephanus truncatus
AnimaliaInsectaColeopteraPsylliodes chrysocephala
AnimaliaInsectaColeopteraPterostichus melanarius
AnimaliaInsectaColeopteraDelia radicum
AnimaliaInsectaDipteraEpisyrphus balteatus
AnimaliaInsectaDipteraPhlebotomus
AnimaliaInsectaDipteraSphaerophoria scripta
AnimaliaInsectaDipteraAcyrthosiphon pisum
AnimaliaInsectaHemipteraAcyrthosiphon svalbardicum
AnimaliaInsectaHemipteraAphis gossypii
AnimaliaInsectaHemipteraBemisia tabaci
AnimaliaInsectaHemipteraCacopsylla pruni
AnimaliaInsectaHemipteraCacopsylla pyri
AnimaliaInsectaHemipteraCimex pipistrelli
AnimaliaInsectaHemipteraDysaphis plantaginea
AnimaliaInsectaHemipteraHeliococcus bohemicus
AnimaliaInsectaHemipteraLeptoglossus occidentalis
AnimaliaInsectaHemipteraLygaeus eguestris
AnimaliaInsectaHemipteraMacrolophus
AnimaliaInsectaHemipteraMysus ascalonicus
AnimaliaInsectaHemipteraOrthops
AnimaliaInsectaHemipteraParthenolecanium corni
AnimaliaInsectaHemipteraPhenacoccus aceris
AnimaliaInsectaHemipteraPhenacoccus sp Marsannay
AnimaliaInsectaHemipteraPhloeomyzus passerinii
AnimaliaInsectaHemipteraPlanococcus citri
AnimaliaInsectaHemipteraPseudococcus comstocki
AnimaliaInsectaHemipteraScaphoideus titanus
AnimaliaInsectaHemipteraAcromyrmex octospinosus
AnimaliaInsectaHymenopteraAnthophora plumipes
AnimaliaInsectaHymenopteraAphidius ervi
AnimaliaInsectaHymenopteraAscogaster quadridentata
AnimaliaInsectaHymenopteraBaryscapus servadeii
AnimaliaInsectaHymenopteraBlastophaga psenes
AnimaliaInsectaHymenopteraCataglyphis hispanica
AnimaliaInsectaHymenopteraCataglyphis niger
AnimaliaInsectaHymenopteraDiaeretiella rapae
AnimaliaInsectaHymenopteraHabrobracon hebetor
AnimaliaInsectaHymenopteraHyposoter didymator
AnimaliaInsectaHymenopteraLasius niger
AnimaliaInsectaHymenopteraMacrocentrus cingulum
AnimaliaInsectaHymenopteraMastrus
AnimaliaInsectaHymenopteraMegastigmus aculeatus
AnimaliaInsectaHymenopteraOdontomachus hastatus
AnimaliaInsectaHymenopteraPerilampus tristis
AnimaliaInsectaHymenopteraPeristenus digoneutis
AnimaliaInsectaHymenopteraPristomerus vulnerator
AnimaliaInsectaHymenopteraPseudaphycus flavidulus
AnimaliaInsectaHymenopteraTapinoma
AnimaliaInsectaHymenopteraTapinoma minutum
AnimaliaInsectaHymenopteraTersilochus heterocerus
AnimaliaInsectaHymenopteraTetraponera aethiops
AnimaliaInsectaHymenopteraTrichogramma
AnimaliaInsectaHymenopteraTrichogramma chilonis
AnimaliaInsectaHymenopteraTrichogramma evanescens
AnimaliaInsectaHymenopteraTrichomma enecator
AnimaliaInsectaHymenopteraTrissolcus halyomorphae
AnimaliaInsectaHymenopteraWasmannia auropunctata
AnimaliaInsectaHymenopteraBrenthis ino
AnimaliaInsectaLepidopteraCameraria ohridella
AnimaliaInsectaLepidopteraCydalima perspectalis
AnimaliaInsectaLepidopteraCydia molesta
AnimaliaInsectaLepidopteraCydia pomonella
AnimaliaInsectaLepidopteraHeliocheilus albipunctella
AnimaliaInsectaLepidopteraOstrinia nubilalis
AnimaliaInsectaLepidopteraOstrinia scapulalis
AnimaliaInsectaLepidopteraParnassius apollo
AnimaliaInsectaLepidopteraPolyommatus icarus
AnimaliaInsectaLepidopteraSesamia nonagrioides
AnimaliaInsectaLepidopteraSpodoptera frugiperda
AnimaliaInsectaLepidopteraTuta absoluta
AnimaliaInsectaLepidopteraMantis religiosa
AnimaliaInsectaMantodeaAgnotecous
AnimaliaInsectaOrthopteraCaelifera
AnimaliaInsectaOrthopteraChorthippus binotatus
AnimaliaInsectaOrthopteraEphippiger ephippiger
AnimaliaInsectaOrthopteraOmocestus femoralis
AnimaliaInsectaOrthopteraPholidoptera transsylvanica
AnimaliaInsectaOrthopteraBacillus
AnimaliaInsectaPhasmidaMyrsidea nesomimi
AnimaliaInsectaPhthirapteraPolyplax serrata
AnimaliaInsectaPhthirapteraStylopys melittae
AnimaliaInsectaStrepsipteraGammarus
AnimaliaMalacostracaAmphipodaNiphargus kochianus
AnimaliaMalacostracaAmphipodaAstacus leptodactylus
AnimaliaMalacostracaDecapodaHemigrapsus sanguineus
AnimaliaMalacostracaDecapodaHemigrapsus takonoi
AnimaliaMalacostracaDecapodaMacrobrachium faustinum
AnimaliaMalacostracaDecapodaPachygrapsus marmoratus
AnimaliaMalacostracaDecapodaPanulirus guttatus
AnimaliaMalacostracaDecapodaArmadillidium nasatum
AnimaliaMalacostracaIsopodaArmadillidium vulgare
AnimaliaMalacostracaIsopodaJaera albifrons
AnimaliaMalacostracaIsopodaPorcellio dilatatus
AnimaliaMalacostracaIsopodaPorcellionides pruinosus
AnimaliaMalacostracaIsopodaMartes foina
AnimaliaMammaliaCarnivoraMungos
AnimaliaMammaliaCarnivoraUrva auropunctata
AnimaliaMammaliaCarnivoraTursiops truncatus
AnimaliaMammaliaCetaceaBalaenoptera physalus
AnimaliaMammaliaCetartiodactylaHippotragus niger
AnimaliaMammaliaCetartiodactylaAnoura geoffroyi
AnimaliaMammaliaChiropteraMormopterus francoismoutoui
AnimaliaMammaliaChiropteraPteronotus parnelii
AnimaliaMammaliaChiropteraLepus capensis
AnimaliaMammaliaLagomorphaLepus europaeus
AnimaliaMammaliaLagomorphaElephantulus myurus
AnimaliaMammaliaMacroscelideaRhynchocyon petersi
AnimaliaMammaliaMacroscelideaMandrillus sphinx
AnimaliaMammaliaPrimatesMicrocebus
AnimaliaMammaliaPrimatesElephas lounesensis
AnimaliaMammaliaProboscideaAcomys cilicicus
AnimaliaMammaliaRodentiaBandicota savilei
AnimaliaMammaliaRodentiaEliomys
AnimaliaMammaliaRodentiaGeorychus capensis
AnimaliaMammaliaRodentiaGerbilliscus leucogaster
AnimaliaMammaliaRodentiaMicromys minutus
AnimaliaMammaliaRodentiaMus spretus
AnimaliaMammaliaRodentiaNannospalax montanosyrmiensis
AnimaliaMammaliaRodentiaOtomys
AnimaliaMammaliaRodentiaRattus exulans
AnimaliaMammaliaRodentiaRattus tanezumi
AnimaliaMammaliaRodentiaRhabdomys
AnimaliaMammaliaRodentiaSicista subtilis
AnimaliaMammaliaRodentiaOphiocoma dentata
AnimaliaOphiuroideaOphiuridaAcanthodactylus aureus
AnimaliaReptiliaSquamataAgama boulengeri
AnimaliaReptiliaSquamataAnguis
AnimaliaReptiliaSquamataArchaeolacerta
AnimaliaReptiliaSquamataBothrops marmoratus
AnimaliaReptiliaSquamataBothrops matogrossensis
AnimaliaReptiliaSquamataBothrops pauloensis
AnimaliaReptiliaSquamataPodarcis siculus
AnimaliaReptiliaSquamataPodarcis tiliguerta
AnimaliaReptiliaSquamataChelydra serpentina
AnimaliaReptiliaTestudinesTestudo hermanni
AnimaliaReptiliaTestudinesBursaphelenchus xylophilus
AnimaliaSecernenteaAphelenchidaAspiculuris
AnimaliaSecernenteaOxyuridaSteinernema affine
AnimaliaSecernenteaRhabditidaAshworthius sidemi
AnimaliaSecernenteaStrongylidaSpiculopteragia spiculoptera
AnimaliaSecernenteaStrongylidaHeterodera schachtii
AnimaliaSecernenteaTylenchidaMeloidogyne chitwoodi
AnimaliaSecernenteaTylenchidaMeloidogyne fallax
AnimaliaSecernenteaTylenchidaFascioloides
AnimaliaTrematodaEchinostomidaDiplostomum baeri
AnimaliaTrematodaStrigeididaAlexandrium catenella
ChromistaDinophyceaeGonyaulacalesAlexandrium tamarense
ChromistaDinophyceaeGonyaulacalesBremia lactucae
ChromistaPeronosporeaPeronosporalesPhytophthora alni subsp multiformis
ChromistaPeronosporeaPeronosporalesPhytophthora alni subsp uniformis
ChromistaPeronosporeaPeronosporalesPhytophthora megakarya
ChromistaPeronosporeaPeronosporalesPhytophthora palmivora
ChromistaPeronosporeaPeronosporalesPlasmopara halstedii
ChromistaPeronosporeaPeronosporalesPlasmopara viticola
ChromistaPeronosporeaPeronosporalesSargassium
ChromistaPhaeophyceaeFucalesSargassum muticum
ChromistaPhaeophyceaeFucalesSargassum polycystum
ChromistaPhaeophyceaeFucalesAgaricus subrufescens
FungiAgaricomycetesAgaricalesAmanita caesarea
FungiAgaricomycetesAgaricalesDiplodia pinea
FungiDothideomycetesBotryosphaerialesMicrocyclus ulei
FungiDothideomycetesBotryosphaerialesMycosphaerella pinodes
FungiDothideomycetesCapnodialesAmpelomyces quisqualis
FungiDothideomycetesPleosporalesChaetothyriale CTeY2
FungiEurotiomycetesChaetothyrialesChaetothyriale Pet3S2a
FungiEurotiomycetesChaetothyrialesErysiphe alphitoides
FungiLeotiomycetesErysiphalesErysiphe necator
FungiLeotiomycetesErysiphalesChalara fraxinea
FungiLeotiomycetesHelotialesLamproderma
FungiMyxomycetesStemonitalesAphanomyces euteiches
FungiOomycetesSaprolegnialesMorchella conica
FungiPezizomycetesPezizalesMetschnikowia gruessii
FungiSaccharomycetesSaccharomycetalesColletotrichum kahawae
FungiSordariomycetesGlomerellalesBeauveria
FungiSordariomycetesHypocrealesFusarium xylarioides
FungiSordariomycetesHypocrealesMicrodochium dimerum
FungiSordariomycetesXylarialesAmphibolis antarctica
PlantaeEquisetopsidaAlismatalesCymodocea rotundata
PlantaeEquisetopsidaAlismatalesElodea nuttallii
PlantaeEquisetopsidaAlismatalesHalodule uninervis
PlantaeEquisetopsidaAlismatalesHalodule wrightii
PlantaeEquisetopsidaAlismatalesHalophila ovalis
PlantaeEquisetopsidaAlismatalesPosidonia sinusoa
PlantaeEquisetopsidaAlismatalesRuppia maritima
PlantaeEquisetopsidaAlismatalesRuppia tuberosa
PlantaeEquisetopsidaAlismatalesSyringodium filiforme
PlantaeEquisetopsidaAlismatalesSyringodium isoetifolium
PlantaeEquisetopsidaAlismatalesThalassia hemprichii
PlantaeEquisetopsidaAlismatalesThalassia testudinum
PlantaeEquisetopsidaAlismatalesTofieldia
PlantaeEquisetopsidaAlismatalesZostera muelleri
PlantaeEquisetopsidaAlismatalesCrithmum maritimum
PlantaeEquisetopsidaApialesDaucus carota
PlantaeEquisetopsidaApialesEryngium viviparum
PlantaeEquisetopsidaApialesHeracleum persicum
PlantaeEquisetopsidaApialesKelussia odoratissima
PlantaeEquisetopsidaApialesOenanthe aquatica
PlantaeEquisetopsidaApialesChamaerops humilis
PlantaeEquisetopsidaArecalesAllium cepa
PlantaeEquisetopsidaAsparagalesCephalanthera damasonium
PlantaeEquisetopsidaAsparagalesGladiolus palustris Gaudin
PlantaeEquisetopsidaAsparagalesIris chamaeiris
PlantaeEquisetopsidaAsparagalesNerine humilis
PlantaeEquisetopsidaAsparagalesOphrys
PlantaeEquisetopsidaAsparagalesAmbrosia artemisiifolia
PlantaeEquisetopsidaAsteralesAmbrosia trifida
PlantaeEquisetopsidaAsteralesCampanula glomerata
PlantaeEquisetopsidaAsteralesFilago carpetana/gaditana
PlantaeEquisetopsidaAsteralesLeibnitzia anandria
PlantaeEquisetopsidaAsteralesSonchus fragilis
PlantaeEquisetopsidaAsteralesTaraxacum kok-saghyz
PlantaeEquisetopsidaAsteralesCapsella bursa-pastoris
PlantaeEquisetopsidaBrassicalesSubularia aquatica
PlantaeEquisetopsidaBrassicalesBryum pseudotriquetrum
PlantaeEquisetopsidaBryalesArmeria maritima
PlantaeEquisetopsidaCaryophyllalesAtriplex tatarica
PlantaeEquisetopsidaCaryophyllalesDianthus deltoides
PlantaeEquisetopsidaCaryophyllalesDrosera
PlantaeEquisetopsidaCaryophyllalesLyallia kerguelensis
PlantaeEquisetopsidaCaryophyllalesMinuartia
PlantaeEquisetopsidaCaryophyllalesRumex alpinus
PlantaeEquisetopsidaCaryophyllalesSilene dioica
PlantaeEquisetopsidaCaryophyllalesSilene nutans
PlantaeEquisetopsidaCaryophyllalesSilene vulgaris
PlantaeEquisetopsidaCaryophyllalesJuniperus
PlantaeEquisetopsidaCupressalesJuniperus oxycedrus
PlantaeEquisetopsidaCupressalesJuniperus phoenicea
PlantaeEquisetopsidaCupressalesJuniperus thurifera
PlantaeEquisetopsidaCupressalesThuja occidentalis
PlantaeEquisetopsidaCupressalesDicranum frutescens
PlantaeEquisetopsidaDicranalesLonicera implexa
PlantaeEquisetopsidaDipsacalesValeriana microphylla
PlantaeEquisetopsidaDipsacalesEphedra fragilis
PlantaeEquisetopsidaEphedralesAndrosace septentrionalis
PlantaeEquisetopsidaEricalesCariniana pyriformis
PlantaeEquisetopsidaEricalesDiospyros crassifolia
PlantaeEquisetopsidaEricalesPrimula vulgaris
PlantaeEquisetopsidaEricalesRhododendron ferrugineum
PlantaeEquisetopsidaEricalesAcacia gerrardii
PlantaeEquisetopsidaFabalesAcacia harpophylla
PlantaeEquisetopsidaFabalesAcacia puece
PlantaeEquisetopsidaFabalesAnthyllis vulneraria
PlantaeEquisetopsidaFabalesLupinus polyphyllus
PlantaeEquisetopsidaFabalesOxytropis almaatensis
PlantaeEquisetopsidaFabalesVicia
PlantaeEquisetopsidaFabalesVicia ervilia
PlantaeEquisetopsidaFabalesAlnus glutinosa
PlantaeEquisetopsidaFlagalesGentianella bohemica
PlantaeEquisetopsidaGentianalesNauclea diderrichii
PlantaeEquisetopsidaGentianalesVincetoxicum hirundinaria
PlantaeEquisetopsidaGentianalesErodium cicutarium
PlantaeEquisetopsidaGeranialesGeranium robertianum
PlantaeEquisetopsidaGeranialesAntirrhinum majus
PlantaeEquisetopsidaLamialesHemimeris
PlantaeEquisetopsidaLamialesLamium amplexicaule
PlantaeEquisetopsidaLamialesLigustrum
PlantaeEquisetopsidaLamialesLinaria
PlantaeEquisetopsidaLamialesLinaria accitensis/aeruginea
PlantaeEquisetopsidaLamialesLittorella
PlantaeEquisetopsidaLamialesLycopus europaeus
PlantaeEquisetopsidaLamialesOcimum basilicum
PlantaeEquisetopsidaLamialesOdontites viscosus
PlantaeEquisetopsidaLamialesOrobanche ramosa type C
PlantaeEquisetopsidaLamialesOrobanche ramosa type T
PlantaeEquisetopsidaLamialesSatureja
PlantaeEquisetopsidaLamialesThymus vulgaris
PlantaeEquisetopsidaLamialesBarteria fistulosa
PlantaeEquisetopsidaMalpighialesIrvingia gabonensis
PlantaeEquisetopsidaMalpighialesLinum
PlantaeEquisetopsidaMalpighialesMercurialis annua
PlantaeEquisetopsidaMalpighialesViola arvensis
PlantaeEquisetopsidaMalpighialesViola calaminaria
PlantaeEquisetopsidaMalpighialesViola cazorlensis
PlantaeEquisetopsidaMalpighialesViola tricolor ssp curtisii
PlantaeEquisetopsidaMalpighialesHelianthemum
PlantaeEquisetopsidaMalvalesHelianthemum squamatum
PlantaeEquisetopsidaMalvalesTilia mexicana
PlantaeEquisetopsidaMalvalesEpilobium hirsutum
PlantaeEquisetopsidaMyrtalesLaguncularia racemosa
PlantaeEquisetopsidaMyrtalesOxalis pes-caprae
PlantaeEquisetopsidaOxalidalesAbies alba
PlantaeEquisetopsidaPinalesCedrus atlantica
PlantaeEquisetopsidaPinalesLarix decidua
PlantaeEquisetopsidaPinalesPinus nigra
PlantaeEquisetopsidaPinalesPseudotsuga menziesii
PlantaeEquisetopsidaPinalesAlopecurus myosuroides
PlantaeEquisetopsidaPoalesFestuca eskia
PlantaeEquisetopsidaPoalesSpartina
PlantaeEquisetopsidaPoalesOligotichum hercynicum
PlantaeEquisetopsidaPolytrichalesLeucadendron coniferum
PlantaeEquisetopsidaProtealesHelleborus foetidus
PlantaeEquisetopsidaRanunculalesPapaver rhoeas
PlantaeEquisetopsidaRanunculalesFicus capensis
PlantaeEquisetopsidaRosalesFicus carica
PlantaeEquisetopsidaRosalesFicus nitida
PlantaeEquisetopsidaRosalesFicus reflexa
PlantaeEquisetopsidaRosalesFicus vogelli
PlantaeEquisetopsidaRosalesPariaetaria judaica
PlantaeEquisetopsidaRosalesSantiria
PlantaeEquisetopsidaSapindalesSolanum elaeagnifolium
PlantaeEquisetopsidaSolanalesWelwitschia mirabilis
PlantaeEquisetopsidaWelwitschialesMaranta
PlantaeEquisetopsidaZingiberalesMusa bukensis
PlantaeEquisetopsidaZingiberalesVandenboschia speciosa
PlantaeFilicopsidaHymenophyllalesNoccaea caerulescens
PlantaeMagnoliopsidaCapparalesLysimachia arvensis
PlantaeMagnoliopsidaPrimulalesTubifera ferruginosa
ProtozoaMyxogastreaLiceidaTrichia varia
ProtozoaMyxogastreaTrichiidaPlasmodiophora brassicae

Molecular barcoding (also known as DNA barcoding) is a molecular taxonomy technique for genetically characterizing a sample referring to a gene from the mitochondrial genome (COI, 16S, etc.).

Applications

This technique can be used to classify individuals from unknown species or to characterize a sample by comparison with a database.

Barcoding is notably used to:

  • Analyze samples.
  • Identify plant or animal species (taxonomy).
  • Analyze and compare levels of biodiversity in complex samples (metabarcoding).

GenoScreen - Services provided

GenoScreen offers a comprehensive molecular barcoding service:

  • Extraction from a large range of matrices stored in ethanol, propylene, glycol, etc.
  • Amplification of an appropriate region of the mitochondrial or chloroplast genome (COI, 16S, Cytb, rbcL, matk, etc.), depending on the species being studied.
  • Sequencing.
  • Sequence assembly and alignment on a reference sequence or the NCBI database.

For pure and unique samples, GenoScreen also offers Sanger sequencing services.

If your initial matrix is complex (e.g. an assembly of bacterial populations from the soil, intestinal flora, coral reefs, etc.), GenoScreen can develop metabarcoding solutions via NGS amplicon sequencing.

Ask for a quotation

The identification and genotyping are essential in the discovery of genetics variations, specially in the studies of the populations and pathologies.

These analyses are extremely informative for many key scientific activities:

  • Food traceability.
  • Biomarker development and validation (screening/diagnostics, functional genomics, trait prediction models, etc.).
  • Studies of genetic diversity and evolution (phylogeny, etc.).
  • Identification of individuals (criminals, bodies) or links between individuals (paternity tests).
  • Genomic selection (agriculture, animal husbandry, etc.).

 

Ask for a quotation

 

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Agenda

  • August 14-19, 2022

    18th International Symposium on Microbial Ecology (ISME), Lausanne - Switzerland

    Meet us at the 18th International Symposium on Microbial Ecology (ISME), from August 14 to 19, 2022 in Lausanne - Switzerland. More information

  • June 26-29, 2022

    Annual Meeting of the European Society of Mycobacteriology

    Meet us at the 42nd Annual Meeting of the European Society of Mycobacteriology (ESM), from June 26 to 29, 2022 in Bologna - Italy. More information

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