Publications 2015


Coline Plé, Romain Richoux, Julien Jardin, Marine Nurdin, Valérie Briard-Bion, Sandrine Parayre, Stéphanie Ferreira, Bruno Pot, Guillaume Bouguen, Stéphanie-Marie Deutsch, Hélène Falentin, Benoit Foligné, Gwénaël Jan.
Single-strain starter experimental cheese reveals anti-inflammatory effect of Propionibacterium freudenreichii CIRM BIA 129 in TNBS-colitis model,
Journal of Functionnal Foods. 2015, Aug : 575-585.


Genitsaris, S; Monchy, S; Viscogliosi, E; Sime-Ngando, T; Ferreira, S; Christaki, U.
Seasonal variations of marine protist community structure based on taxon-specific traits using the eastern English Channel as a model coastal system,
FEMS Microbiol Ecol. 2015 May : 91(5).


Pankhurst LJ, Del Ojo Elias C, Votintseva AA, Walker TM, Cole K, Davies J, Fermont JM, Gascoyne-Binzi DM, Kohl TA, Kong C, Lemaitre N, Niemann S, Paul J, Rogers TR, Roycroft E, Smith EG, Supply P, Tang P, Wilcox MH, Wordsworth S, Wyllie D, Xu L, Crook DW; COMPASS-TB Study Group.
Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study - Lancet Respir Med.- 2015 Dec 3


Dr Timothy M Walker, Thomas A Kohl, PhD, Shaheed V Omar, MSc, Jessica Hedge, PhD, Carlos Del Ojo Elias, MSc, Phelim Bradley, MPhil, Zamin Iqbal, DPhil, Silke Feuerriegel, PhD, Katherine E Niehaus, MS, Daniel J Wilson, DPhil, David A Clifton, DPhil, Georgia Kapatai, PhD, Camilla L C Ip, PhD, Rory Bowden, PhD, Francis A Drobniewski, PhD, Caroline Allix-Béguec, PhD, Cyril Gaudin, PhD, Julian Parkhill, PhD, Roland Diel, PhD, Philip Supply, PhD, Derrick W Crook, FRCPath, E Grace Smith, FRCPath, A Sarah Walker, PhD, Nazir Ismail, FCPath, Stefan Niemann, PhD, Tim E A Peto, FRCP
Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study - The Lancet Infectious Diseases - 2015 June 23


Matthias Merker, Camille Blin, Stefano Mona, Nicolas Duforet-Frebourg, Sophie Lecher, Eve Willery, Michael Blum, Sabine Rüsch-Gerdes, Igor Mokrousov, Eman Aleksic, Caroline Allix-Béguec, Annick Antierens, Ewa Augustynowicz-Kopeć, Marie Ballif, Francesca Barletta, Hans Peter Beck, Clifton E Barry III, Maryline Bonnet, Emanuele Borroni, Isolina Campos-Herrero, Daniela Cirillo, Helen Cox, Suzanne Crowe, Valeriu Crudu, Roland Diel, Francis Drobniewski, Maryse Fauville-Dufaux, Sébastien Gagneux, Solomon Ghebremichael, Madeleine Hanekom, Sven Hoffner, Wei-wei Jiao, Stobdan Kalon, Thomas A Kohl, Irina Kontsevaya, Troels Lillebæk, Shinji Maeda, Vladyslav Nikolayevskyy, Michael Rasmussen, Nalin Rastogi, Sofia Samper, Elisabeth Sanchez-Padilla, Branislava Savic, Isdore Chola Shamputa, Adong Shen, Li-Hwei Sng, Petras Stakenas, Kadri Toit, Francis Varaine, Dragana Vukovic, Céline Wahl, Robin Warren, Philip Supply, Stefan Niemann & Thierry Wirth
Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage - Nature Genetics - 2015 Jan 19


Papadimitriou K, Anastasiou R, Maistrou E, Plakas T, Papandreou NC, Hamodrakas SJ,
Ferreira S, Supply P, Renault P, Pot B, Tsakalidou E
Acquisition throughhorizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC198 points towards the dairy origin of the speciesPLoS One - 2015 Jan13;10(1)


Terrat S, Plassart P, Bourgeois E, Ferreira S, Dequiedt S, Adele-Dit-De-Renseville N, Lemanceau P, Bispo A, Chabbi A, Maron PA, Ranjard L.
Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition - Microb Biotechnol - 2015 Jan;8(1):131-42